{
  "_id": "6ad0770be2d863f662954bbb",
  "Package": "SCOPRO",
  "Type": "Package",
  "Title": "Score Projection Between in 'Vivo' and in 'Vitro' Datasets",
  "Version": "0.1.0",
  "Author": "Gabriele Lubatti",
  "Maintainer": "Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>",
  "Description": "Assigns a score projection from 0 to 1 between a given in\n'vivo' stage and each single cluster from an in 'vitro'\ndataset. The score is assigned based on the the fraction of\nspecific markers of the in 'vivo' stage that are conserved in\nthe in 'vitro' clusters <https://github.com/ScialdoneLab>.",
  "License": "GPL-3",
  "VignetteBuilder": "knitr",
  "biocViews": "software",
  "BugReports": "https://github.com/ScialdoneLab/SCOPRO/issues",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.1.1",
  "Config/testthat/edition": "3",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-15 06:22:50 UTC",
    "User": "root"
  },
  "Repository": "https://gabrielelubatti.r-universe.dev",
  "Date/Publication": "2022-08-23 07:10:05 UTC",
  "RemoteUrl": "https://github.com/cran/SCOPRO",
  "RemoteRef": "HEAD",
  "RemoteSha": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
  "_user": "gabrielelubatti",
  "_type": "src",
  "_file": "SCOPRO_0.1.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/cfd5d02b62a4fce8de44cc01310ecf973a6379e340045959d96571e227ce5b64",
  "_filesize": 393372,
  "_sha256": "cfd5d02b62a4fce8de44cc01310ecf973a6379e340045959d96571e227ce5b64",
  "_expires": "2027-01-23T06:46:00.000Z",
  "_created": "2026-10-15T06:22:50.000Z",
  "_published": "2026-10-15T06:47:39.255Z",
  "_buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_jobs": [
    {
      "job": 116280087684,
      "time": 221,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11952427464"
    },
    {
      "job": 116280087540,
      "time": 189,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11952617184"
    },
    {
      "job": 116280087513,
      "time": 204,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11952484281"
    },
    {
      "job": 116280087547,
      "time": 165,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11954085417"
    },
    {
      "job": 116278680872,
      "time": 266,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11952581573"
    },
    {
      "job": 116280087523,
      "time": 110,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "11951754649"
    },
    {
      "job": 116280087597,
      "time": 69,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11952926325"
    },
    {
      "job": 116280087689,
      "time": 70,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "11952641766"
    },
    {
      "job": 116280087536,
      "time": 70,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11952611731"
    }
  ],
  "_upstream": "https://github.com/cran/SCOPRO",
  "_commit": {
    "id": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
    "author": "Gabriele Lubatti <gabriele.lubatti@helmholtz-muenchen.de>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.0\n",
    "time": 1661238605
  },
  "_maintainer": {
    "name": "Gabriele Lubatti",
    "email": "gabriele.lubatti@helmholtz-muenchen.de",
    "login": "gabrielelubatti",
    "description": "\n",
    "uuid": 65945548
  },
  "_distro": "resolute",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.0",
      "role": "Depends"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "CIARA",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_topics": [
    "software"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "gabrielelubatti",
      "count": 1,
      "uuid": 65945548
    }
  ],
  "_userbio": {
    "uuid": 65945548,
    "type": "user",
    "name": "gabrielelubatti",
    "followers": 0
  },
  "_downloads": {
    "count": 246,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/SCOPRO"
  },
  "_devurl": "https://github.com/scialdonelab/scopro",
  "_searchresults": 4,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/readme.html",
    "extra/readme.md",
    "extra/SCOPRO.html"
  ],
  "_realowner": "gabrielelubatti",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2022-08-23"
    }
  ],
  "_exports": [
    "filter_in_vitro",
    "plot_score",
    "plot_score_genes",
    "SCOPRO",
    "select_common_genes",
    "select_no_common_genes",
    "select_top_markers"
  ],
  "_help": [
    {
      "page": "filter_in_vitro",
      "title": "filter_in_vitro",
      "topics": [
        "filter_in_vitro"
      ]
    },
    {
      "page": "plot_score",
      "title": "plot_score",
      "topics": [
        "plot_score"
      ]
    },
    {
      "page": "plot_score_genes",
      "title": "plot_score_genes",
      "topics": [
        "plot_score_genes"
      ]
    },
    {
      "page": "SCOPRO",
      "title": "SCOPRO",
      "topics": [
        "SCOPRO"
      ]
    },
    {
      "page": "select_common_genes",
      "title": "select_common_genes",
      "topics": [
        "select_common_genes"
      ]
    },
    {
      "page": "select_no_common_genes",
      "title": "select_no_common_genes",
      "topics": [
        "select_no_common_genes"
      ]
    },
    {
      "page": "select_top_markers",
      "title": "select_top_markers",
      "topics": [
        "select_top_markers"
      ]
    }
  ],
  "_readme": "https://github.com/cran/SCOPRO/raw/HEAD/README.md",
  "_rundeps": [
    "cli",
    "cpp11",
    "farver",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lifecycle",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_vignettes": [
    {
      "source": "SCOPRO_vignette.Rmd",
      "filename": "SCOPRO_vignette.html",
      "title": "SCOPRO",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Load mouse ESCs raw count matrix",
        "Load in vivo mouse datasets",
        "Compute markers for selected in vivo stages",
        "Select only black/white markers for in vivo stages",
        "Run SCOPRO",
        "Visualization of conserved/ not conserved genes between late 2 cells stage and in vitro clusters"
      ],
      "created": "2022-08-23 07:10:05",
      "modified": "2022-08-23 07:10:05",
      "commits": 1
    }
  ],
  "_score": 2.6989700043360187,
  "_indexed": true,
  "_nocasepkg": "scopro",
  "_universes": [
    "gabrielelubatti",
    "scialdonelab"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-15T06:26:24.000Z",
      "distro": "resolute",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/cd0ccd805891d4d54bb6f8169bbc7557b00ac0c865a8a2883aa586c1dbeb7c90",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "0.1.0",
      "date": "2026-10-15T06:25:34.000Z",
      "distro": "resolute",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/a0f5f4b85e3c7ea65649e7fa91826bddd30f471c743caad34649f853686d1240",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-15T06:37:18.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/6d6cd0dfd5898b82e6544696c67c91f0229b80cd1f837a4ba873630caf80ce20",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "0.1.0",
      "date": "2026-10-15T06:44:38.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/e22260a0d72d86a4ab2cf506d63d572ca0f9ba737994b5c00a15fa25465bc049",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.0",
      "date": "2026-10-15T06:24:57.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/9ed305ba0326d4ce826ee2cfa7961c250caf502dab6a579c5e990ac57d4eaaef",
      "status": "success",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T06:24:01.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/8cc815108e6937580c88ed80ae231a63a557fec57d1c9be4e7c36ae5c2918359",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T06:24:03.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/c939310aa531b16e808778e4e1176488c6f27fe68f511a05892ba14d670d0fb4",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "0.1.0",
      "date": "2026-10-15T06:24:00.000Z",
      "commit": "d1962de08f21b1a2b69e0eb3cdd77a35f4156abe",
      "fileid": "https://r2.ropensci.org/3053848a7f0f040a9f9b21d05a956c0419482af1fe097562fde528ef7004fca5",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/gabrielelubatti/actions/runs/38691618673"
    }
  ]
}