Package: CIARA 0.1.0

CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

Identification of markers of rare cell types by looking at genes whose expression is confined in small regions of the expression space <https://github.com/ScialdoneLab>.

Authors:Gabriele Lubatti

CIARA_0.1.0.tar.gz
CIARA_0.1.0.zip(r-4.7)CIARA_0.1.0.zip(r-4.6)CIARA_0.1.0.zip(r-4.5)
CIARA_0.1.0.tgz(r-4.6-any)CIARA_0.1.0.tgz(r-4.5-any)
CIARA_0.1.0.tar.gz(r-4.7-any)CIARA_0.1.0.tar.gz(r-4.6-any)
CIARA_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
CIARA/json (API)

# Install 'CIARA' in R:

install.packages('CIARA', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software

2.70 score 7 scripts 264 downloads 18 exports 52 dependencies

Last updated from:fdba9cd1aa. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	200
source / vignettes	OK	259
linux-release-x86_64	OK	213
macos-release-arm64	OK	160
macos-oldrel-arm64	OK	127
windows-devel	OK	158
windows-release	OK	120
windows-oldrel	OK	114
wasm-release	OK	168

Exports:CIARA CIARA_gene cluster_analysis_integrate_rare cluster_analysis_sub find_resolution get_background_full guide_edge_colourbar markers_cluster_seurat merge_cluster plot_balloon_marker plot_gene plot_genes_sum plot_heatmap_marker plot_interactive plot_umap selection_localized_genes test_hvg white_black_markers

Dependencies:base64enc Biobase BiocGenerics cachem cli cpp11 dplyr farver fastmap generics ggforce ggplot2 ggraph ggrepel glue graphlayouts gridExtra gtable igraph isoband jsonlite labeling lattice lifecycle magrittr MASS Matrix memoise pillar pkgconfig polyclip purrr R6 RColorBrewer Rcpp RcppArmadillo rlang S7 scales stringi stringr systemfonts tibble tidygraph tidyr tidyselect tweenr utf8 vctrs viridis viridisLite withr

CIARA

Rendered fromCIARA.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2022-02-22
Started: 2022-02-22

Citation

Readme and manuals

Help Manual

Help page	Topics
CIARA	CIARA
CIARA_gene	CIARA_gene
cluster_analysis_integrate_rare	cluster_analysis_integrate_rare
cluster_analysis_sub	cluster_analysis_sub
find_resolution	find_resolution
get_background_full	get_background_full
markers_cluster_seurat	markers_cluster_seurat
merge_cluster	merge_cluster
plot_balloon_marker	plot_balloon_marker
plot_gene	plot_gene
plot_genes_sum	plot_genes_sum
plot_heatmap_marker	plot_heatmap_marker
plot_interactive	plot_interactive
plot_umap	plot_umap
selection_localized_genes	selection_localized_genes
test_hvg	test_hvg
white_black_markers	white_black_markers