Package: CIARA 0.1.0

CIARA: Cluster Independent Algorithm for Rare Cell Types Identification

Identification of markers of rare cell types by looking at genes whose expression is confined in small regions of the expression space <https://github.com/ScialdoneLab>.

Authors:Gabriele Lubatti

CIARA_0.1.0.tar.gz
CIARA_0.1.0.zip(r-4.5)CIARA_0.1.0.zip(r-4.4)CIARA_0.1.0.zip(r-4.3)
CIARA_0.1.0.tgz(r-4.4-any)CIARA_0.1.0.tgz(r-4.3-any)
CIARA_0.1.0.tar.gz(r-4.5-noble)CIARA_0.1.0.tar.gz(r-4.4-noble)
CIARA_0.1.0.tgz(r-4.4-emscripten)CIARA_0.1.0.tgz(r-4.3-emscripten)
CIARA.pdf |CIARA.html✨
CIARA/json (API)

Peer review:

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

18 exports 0.00 score 55 dependencies 7 scripts 239 downloads

Last updated 3 years agofrom:fdba9cd1aa. Checks:OK: 7. Indexed: yes.

Exports:CIARACIARA_genecluster_analysis_integrate_rarecluster_analysis_subfind_resolutionget_background_fullguide_edge_colourbarmarkers_cluster_seuratmerge_clusterplot_balloon_markerplot_geneplot_genes_sumplot_heatmap_markerplot_interactiveplot_umapselection_localized_genestest_hvgwhite_black_markers

Dependencies:BiobaseBiocGenericscachemclicolorspacecpp11dplyrfansifarverfastmapgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobandlabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr