Package: CIARA 0.1.0
CIARA: Cluster Independent Algorithm for Rare Cell Types Identification
Identification of markers of rare cell types by looking at genes whose expression is confined in small regions of the expression space <https://github.com/ScialdoneLab>.
Authors:
CIARA_0.1.0.tar.gz
CIARA_0.1.0.zip(r-4.5)CIARA_0.1.0.zip(r-4.4)CIARA_0.1.0.zip(r-4.3)
CIARA_0.1.0.tgz(r-4.5-any)CIARA_0.1.0.tgz(r-4.4-any)CIARA_0.1.0.tgz(r-4.3-any)
CIARA_0.1.0.tar.gz(r-4.5-noble)CIARA_0.1.0.tar.gz(r-4.4-noble)
CIARA_0.1.0.tgz(r-4.4-emscripten)CIARA_0.1.0.tgz(r-4.3-emscripten)
CIARA.pdf |CIARA.html✨
CIARA/json (API)
| # Install 'CIARA' in R: |
| install.packages('CIARA', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 3 years agofrom:fdba9cd1aa. Checks:8 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 27 2025 |
| R-4.5-win | OK | Jan 27 2025 |
| R-4.5-mac | OK | Jan 27 2025 |
| R-4.5-linux | OK | Jan 27 2025 |
| R-4.4-win | OK | Jan 27 2025 |
| R-4.4-mac | OK | Jan 27 2025 |
| R-4.3-win | OK | Dec 28 2024 |
| R-4.3-mac | OK | Dec 28 2024 |
Exports:CIARACIARA_genecluster_analysis_integrate_rarecluster_analysis_subfind_resolutionget_background_fullguide_edge_colourbarmarkers_cluster_seuratmerge_clusterplot_balloon_markerplot_geneplot_genes_sumplot_heatmap_markerplot_interactiveplot_umapselection_localized_genestest_hvgwhite_black_markers
Dependencies:BiobaseBiocGenericscachemclicolorspacecpp11dplyrfansifarverfastmapgenericsggforceggplot2ggraphggrepelgluegraphlayoutsgridExtragtableigraphisobandjsonlitelabelinglatticelifecyclemagrittrMASSMatrixmemoisemgcvmunsellnlmepillarpkgconfigpolyclippurrrR6RColorBrewerRcppRcppArmadilloRcppEigenrlangscalesstringistringrsystemfontstibbletidygraphtidyrtidyselecttweenrutf8vctrsviridisviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| CIARA | CIARA |
| CIARA_gene | CIARA_gene |
| cluster_analysis_integrate_rare | cluster_analysis_integrate_rare |
| cluster_analysis_sub | cluster_analysis_sub |
| find_resolution | find_resolution |
| get_background_full | get_background_full |
| markers_cluster_seurat | markers_cluster_seurat |
| merge_cluster | merge_cluster |
| plot_balloon_marker | plot_balloon_marker |
| plot_gene | plot_gene |
| plot_genes_sum | plot_genes_sum |
| plot_heatmap_marker | plot_heatmap_marker |
| plot_interactive | plot_interactive |
| plot_umap | plot_umap |
| selection_localized_genes | selection_localized_genes |
| test_hvg | test_hvg |
| white_black_markers | white_black_markers |
