Rendered from
WOTPLY_vignette.Rmdusingknitr::rmarkdownPackage: WOTPLY 0.1.0
WOTPLY: Plot Connectivity Between Cells from Different Time Points
It shows the connections between selected clusters from the latest time point and the clusters from all the previous time points. The transition matrices between time point t and t+1 are obtained from Waddington-OT analysis <https://github.com/ScialdoneLab/WOTPLY>.
Authors:
WOTPLY_0.1.0.tar.gz
WOTPLY_0.1.0.zip(r-4.7-any)WOTPLY_0.1.0.zip(r-4.6-any)WOTPLY_0.1.0.zip(r-4.5-any)
WOTPLY_0.1.0.tgz(r-4.6-any)WOTPLY_0.1.0.tgz(r-4.5-any)
WOTPLY_0.1.0.tar.gz(r-4.7-any)WOTPLY_0.1.0.tar.gz(r-4.6-any)
WOTPLY_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
WOTPLY/json (API)
| # Install 'WOTPLY' in R: |
| install.packages('WOTPLY', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:4ee0b1ae45. Checks:7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | NOTE | 108 | ||
| source / vignettes | OK | 193 | ||
| linux-release | NOTE | 115 | ||
| macos-release | NOTE | 81 | ||
| macos-oldrel | NOTE | 95 | ||
| windows-devel | NOTE | 70 | ||
| windows-release | NOTE | 71 | ||
| windows-oldrel | NOTE | 56 | ||
| wasm-release | OK | 109 |
Exports:convert_namesget_transition_matrixselect_top_weightsWOTPLY
Dependencies:clicodacpp11crayondplyrfarverforcatsgenericsGGallyggplot2ggstatsgluegtablehmsisobandlabelinglatticelifecyclemagrittrMatrixnetworkpatchworkpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerrlangS7scalessnastatnet.commonstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| convert_names | convert_names |
| get_transition_matrix | get_transition_matrix |
| select_top_weights | select_top_weights |
| WOTPLY | WOTPLY |