Package: WOTPLY 0.1.0

WOTPLY: Plot Connectivity Between Cells from Different Time Points

It shows the connections between selected clusters from the latest time point and the clusters from all the previous time points. The transition matrices between time point t and t+1 are obtained from Waddington-OT analysis <https://github.com/ScialdoneLab/WOTPLY>.

Authors:Gabriele Lubatti [aut, cre, cph]

WOTPLY_0.1.0.tar.gz
WOTPLY_0.1.0.zip(r-4.7)WOTPLY_0.1.0.zip(r-4.6)WOTPLY_0.1.0.zip(r-4.5)
WOTPLY_0.1.0.tgz(r-4.6-any)WOTPLY_0.1.0.tgz(r-4.5-any)
WOTPLY_0.1.0.tar.gz(r-4.7-any)WOTPLY_0.1.0.tar.gz(r-4.6-any)
WOTPLY_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html
card.svg |card.png
WOTPLY/json (API)

# Install 'WOTPLY' in R:
install.packages('WOTPLY', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software

2.00 score 4 scripts 210 downloads 4 exports 43 dependencies

Last updated from:4ee0b1ae45. Checks:7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64NOTE126
source / vignettesOK219
linux-release-x86_64NOTE110
macos-release-arm64NOTE121
macos-oldrel-arm64NOTE93
windows-develNOTE80
windows-releaseNOTE85
windows-oldrelNOTE74
wasm-releaseOK110

Exports:convert_namesget_transition_matrixselect_top_weightsWOTPLY

Dependencies:clicodacpp11crayondplyrfarverforcatsgenericsGGallyggplot2ggstatsgluegtablehmsisobandlabelinglatticelifecyclemagrittrMatrixnetworkpatchworkpillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerrlangS7scalessnastatnet.commonstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

WOTPLY

Rendered fromWOTPLY_vignette.Rmdusingknitr::rmarkdownon May 21 2026.

Last update: 2022-09-12
Started: 2022-09-12

Readme and manuals

Help Manual

Help pageTopics
convert_namesconvert_names
get_transition_matrixget_transition_matrix
select_top_weightsselect_top_weights
WOTPLYWOTPLY