Package: WOTPLY 0.1.0

WOTPLY: Plot Connectivity Between Cells from Different Time Points

It shows the connections between selected clusters from the latest time point and the clusters from all the previous time points. The transition matrices between time point t and t+1 are obtained from Waddington-OT analysis <https://github.com/ScialdoneLab/WOTPLY>.

Authors:Gabriele Lubatti [aut, cre, cph]

WOTPLY_0.1.0.tar.gz
WOTPLY_0.1.0.zip(r-4.5)WOTPLY_0.1.0.zip(r-4.4)WOTPLY_0.1.0.zip(r-4.3)
WOTPLY_0.1.0.tgz(r-4.5-any)WOTPLY_0.1.0.tgz(r-4.4-any)WOTPLY_0.1.0.tgz(r-4.3-any)
WOTPLY_0.1.0.tar.gz(r-4.5-noble)WOTPLY_0.1.0.tar.gz(r-4.4-noble)
WOTPLY_0.1.0.tgz(r-4.4-emscripten)WOTPLY_0.1.0.tgz(r-4.3-emscripten)
WOTPLY.pdf |WOTPLY.html
WOTPLY/json (API)

# Install 'WOTPLY' in R:
install.packages('WOTPLY', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

software

2.00 score 4 scripts 174 downloads 4 exports 50 dependencies

Last updated 2 years agofrom:4ee0b1ae45. Checks:1 OK, 7 NOTE. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 12 2025
R-4.5-winNOTEFeb 12 2025
R-4.5-macNOTEFeb 12 2025
R-4.5-linuxNOTEFeb 12 2025
R-4.4-winNOTEFeb 12 2025
R-4.4-macNOTEFeb 12 2025
R-4.3-winNOTEFeb 12 2025
R-4.3-macNOTEFeb 12 2025

Exports:convert_namesget_transition_matrixselect_top_weightsWOTPLY

Dependencies:clicodacolorspacecpp11crayondplyrfansifarverforcatsgenericsGGallyggplot2ggstatsgluegtablehmsisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnetworknlmepatchworkpillarpkgconfigplyrprettyunitsprogresspurrrR6RColorBrewerRcpprlangscalessnastatnet.commonstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithr

WOTPLY

Rendered fromWOTPLY_vignette.Rmdusingknitr::rmarkdownon Feb 12 2025.

Last update: 2022-09-12
Started: 2022-09-12

Readme and manuals

Help Manual

Help pageTopics
convert_namesconvert_names
get_transition_matrixget_transition_matrix
select_top_weightsselect_top_weights
WOTPLYWOTPLY