Package: MitoHEAR 0.1.0

MitoHEAR: Quantification of Mitochondrial DNA Heteroplasmy

R package that allows the estimation and downstream statistical analysis of the mitochondrial DNA Heteroplasmy calculated from single-cell datasets.

Authors:Gabriele Lubatti

MitoHEAR_0.1.0.tar.gz
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MitoHEAR_0.1.0.tgz(r-4.4-any)MitoHEAR_0.1.0.tgz(r-4.3-any)
MitoHEAR_0.1.0.tar.gz(r-4.5-noble)MitoHEAR_0.1.0.tar.gz(r-4.4-noble)
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MitoHEAR.pdf |MitoHEAR.html✨
MitoHEAR/json (API)

Peer review:

Bug tracker:https://github.com/scialdonelab/mitohear/issues

On CRAN:

software

26 exports 0.74 score 87 dependencies 14 scripts 210 downloads

Last updated 2 years agofrom:3d655c46e4. Checks:OK: 1 NOTE: 6. Indexed: yes.

Exports:choose_features_clusteringclustering_angular_distancedetect_insertiondpt_testfilter_basesget_distributionget_heteroplasmyget_raw_counts_alleleget_wilcox_testplot_allele_frequencyplot_base_coverageplot_batchplot_cells_coverageplot_conditionplot_coordinate_clusterplot_coordinate_heteroplasmyplot_correlation_basesplot_distance_matrixplot_distributionplot_dptplot_genome_coverageplot_heatmapplot_heteroplasmyplot_heteroplasmy_variabilityplot_spider_chartvi_comparison

Dependencies:askpassBHBiocGenericsBiocParallelBiostringsbitopscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayoncurldata.tabledigestdoParalleldynamicTreeCutfansifarverforeachformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicRangesGetoptLongggplot2GlobalOptionsgluegridExtragtablehttrIRangesisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclelpSolvemagrittrMASSMatrixmatrixStatsmcclustmgcvmimemunsellnlmeopensslpillarpkgconfigplyrpngR6RColorBrewerRcppRcppArmadillordistreshape2RhtslibrjsonrlangrlistRsamtoolsS4VectorsscalesshapesnowstringistringrsystibbleUCSC.utilsutf8vctrsviridisLitewithrXMLXVectoryamlzlibbioc