Package: MitoHEAR 0.1.0

MitoHEAR: Quantification of Mitochondrial DNA Heteroplasmy

R package that allows the estimation and downstream statistical analysis of the mitochondrial DNA Heteroplasmy calculated from single-cell datasets.

Authors:Gabriele Lubatti

MitoHEAR_0.1.0.tar.gz
MitoHEAR_0.1.0.zip(r-4.7)MitoHEAR_0.1.0.zip(r-4.6)MitoHEAR_0.1.0.zip(r-4.5)
MitoHEAR_0.1.0.tgz(r-4.6-any)MitoHEAR_0.1.0.tgz(r-4.5-any)
MitoHEAR_0.1.0.tar.gz(r-4.7-any)MitoHEAR_0.1.0.tar.gz(r-4.6-any)
MitoHEAR_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MitoHEAR/json (API)

# Install 'MitoHEAR' in R:
install.packages('MitoHEAR', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/scialdonelab/mitohear/issues

On CRAN:

Conda:

software

2.85 score 14 scripts 197 downloads 26 exports 69 dependencies

Last updated from:3d655c46e4. Checks:7 WARNING, 1 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING196
source / vignettesERROR779
linux-release-x86_64WARNING198
macos-release-arm64WARNING140
macos-oldrel-arm64WARNING116
windows-develWARNING195
windows-releaseWARNING178
windows-oldrelWARNING120
wasm-releaseOK193

Exports:choose_features_clusteringclustering_angular_distancedetect_insertiondpt_testfilter_basesget_distributionget_heteroplasmyget_raw_counts_alleleget_wilcox_testplot_allele_frequencyplot_base_coverageplot_batchplot_cells_coverageplot_conditionplot_coordinate_clusterplot_coordinate_heteroplasmyplot_correlation_basesplot_distance_matrixplot_distributionplot_dptplot_genome_coverageplot_heatmapplot_heteroplasmyplot_heteroplasmy_variabilityplot_spider_chartvi_comparison

Dependencies:BHBiocGenericsBiocParallelBiostringsbitopscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcpp11crayondata.tabledigestdoParalleldynamicTreeCutfarverforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegridExtragtableIRangesisobanditeratorsjsonlitelabelinglambda.rlifecyclelpSolvemagrittrmatrixStatsmcclustplyrpngR6RColorBrewerRcppRcppArmadillordistreshape2RhtslibrjsonrlangrlistRsamtoolsS4VectorsS7scalesSeqinfoshapesnowstringistringrvctrsviridisLitewithrXMLXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
choose_features_clusteringchoose_features_clustering
clustering_angular_distanceclustering_angular_distance
detect_insertiondetect_insertion
dpt_testdpt_test
filter_basesfilter_bases
get_distributionget_distribution
get_heteroplasmyget_heteroplasmy
get_raw_counts_alleleget_raw_counts_allele
get_wilcox_testget_wilcox_test
plot_allele_frequencyplot_allele_frequency
plot_base_coverageplot_base_coverage
plot_batchplot_batch
plot_cells_coverageplot_cells_coverage
plot_conditionplot_condition
plot_coordinate_clusterplot_coordinate_cluster
plot_coordinate_heteroplasmyplot_coordinate_heteroplasmy
plot_correlation_basesplot_correlation_bases
plot_distance_matrixplot_distance_matrix
plot_distributionplot_distribution
plot_dptplot_dpt
plot_genome_coverageplot_genome_coverage
plot_heatmapplot_heatmap
plot_heteroplasmyplot_heteroplasmy
plot_heteroplasmy_variabilityplot_heteroplasmy_variability
plot_spider_chartplot_spider_chart
vi_comparisonvi_comparison