Package: SCOPRO 0.1.0

SCOPRO: Score Projection Between in 'Vivo' and in 'Vitro' Datasets

Assigns a score projection from 0 to 1 between a given in 'vivo' stage and each single cluster from an in 'vitro' dataset. The score is assigned based on the the fraction of specific markers of the in 'vivo' stage that are conserved in the in 'vitro' clusters <https://github.com/ScialdoneLab>.

Authors:Gabriele Lubatti

SCOPRO_0.1.0.tar.gz
SCOPRO_0.1.0.zip(r-4.5)SCOPRO_0.1.0.zip(r-4.4)SCOPRO_0.1.0.zip(r-4.3)
SCOPRO_0.1.0.tgz(r-4.5-any)SCOPRO_0.1.0.tgz(r-4.4-any)SCOPRO_0.1.0.tgz(r-4.3-any)
SCOPRO_0.1.0.tar.gz(r-4.5-noble)SCOPRO_0.1.0.tar.gz(r-4.4-noble)
SCOPRO_0.1.0.tgz(r-4.4-emscripten)SCOPRO_0.1.0.tgz(r-4.3-emscripten)
SCOPRO.pdf |SCOPRO.html✨
SCOPRO/json (API)

# Install 'SCOPRO' in R:
install.packages('SCOPRO', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/scialdonelab/scopro/issues

On CRAN:

software

2.70 score 3 scripts 148 downloads 7 exports 28 dependencies

Last updated 2 years agofrom:d1962de08f. Checks:8 OK. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 06 2025
R-4.5-winOKFeb 06 2025
R-4.5-macOKFeb 06 2025
R-4.5-linuxOKFeb 06 2025
R-4.4-winOKFeb 06 2025
R-4.4-macOKFeb 06 2025
R-4.3-winOKFeb 06 2025
R-4.3-macOKFeb 06 2025

Exports:filter_in_vitroplot_scoreplot_score_genesSCOPROselect_common_genesselect_no_common_genesselect_top_markers

Dependencies:clicolorspacefansifarverggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

SCOPRO

Rendered fromSCOPRO_vignette.Rmdusingknitr::rmarkdownon Feb 06 2025.

Last update: 2022-08-23
Started: 2022-08-23

Readme and manuals

Help Manual

Help pageTopics
filter_in_vitrofilter_in_vitro
plot_scoreplot_score
plot_score_genesplot_score_genes
SCOPROSCOPRO
select_common_genesselect_common_genes
select_no_common_genesselect_no_common_genes
select_top_markersselect_top_markers