Package: SCOPRO 0.1.0

SCOPRO: Score Projection Between in 'Vivo' and in 'Vitro' Datasets

Assigns a score projection from 0 to 1 between a given in 'vivo' stage and each single cluster from an in 'vitro' dataset. The score is assigned based on the the fraction of specific markers of the in 'vivo' stage that are conserved in the in 'vitro' clusters <https://github.com/ScialdoneLab>.

Authors:Gabriele Lubatti

SCOPRO_0.1.0.tar.gz
SCOPRO_0.1.0.zip(r-4.7)SCOPRO_0.1.0.zip(r-4.6)SCOPRO_0.1.0.zip(r-4.5)
SCOPRO_0.1.0.tgz(r-4.6-any)SCOPRO_0.1.0.tgz(r-4.5-any)
SCOPRO_0.1.0.tar.gz(r-4.7-any)SCOPRO_0.1.0.tar.gz(r-4.6-any)
SCOPRO_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SCOPRO/json (API)

# Install 'SCOPRO' in R:

install.packages('SCOPRO', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/scialdonelab/scopro/issues

On CRAN:

software

2.70 score 3 scripts 159 downloads 7 exports 17 dependencies

Last updated from:d1962de08f. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	127
source / vignettes	OK	203
linux-release-x86_64	OK	116
macos-release-arm64	OK	176
macos-oldrel-arm64	OK	171
windows-devel	OK	81
windows-release	OK	82
windows-oldrel	OK	83
wasm-release	OK	113

Exports:filter_in_vitro plot_score plot_score_genes SCOPRO select_common_genes select_no_common_genes select_top_markers

Dependencies:cli cpp11 farver ggplot2 glue gtable isoband labeling lifecycle R6 RColorBrewer rlang S7 scales vctrs viridisLite withr

SCOPRO

Rendered fromSCOPRO_vignette.Rmdusingknitr::rmarkdownon May 31 2026.

Last update: 2022-08-23
Started: 2022-08-23

Citation

Readme and manuals

Help Manual

Help page	Topics
filter_in_vitro	filter_in_vitro
plot_score	plot_score
plot_score_genes	plot_score_genes
SCOPRO	SCOPRO
select_common_genes	select_common_genes
select_no_common_genes	select_no_common_genes
select_top_markers	select_top_markers