Package: SCOPRO 0.1.0

SCOPRO: Score Projection Between in 'Vivo' and in 'Vitro' Datasets

Assigns a score projection from 0 to 1 between a given in 'vivo' stage and each single cluster from an in 'vitro' dataset. The score is assigned based on the the fraction of specific markers of the in 'vivo' stage that are conserved in the in 'vitro' clusters <https://github.com/ScialdoneLab>.

Authors:Gabriele Lubatti

SCOPRO_0.1.0.tar.gz
SCOPRO_0.1.0.zip(r-4.5)SCOPRO_0.1.0.zip(r-4.4)SCOPRO_0.1.0.zip(r-4.3)
SCOPRO_0.1.0.tgz(r-4.4-any)SCOPRO_0.1.0.tgz(r-4.3-any)
SCOPRO_0.1.0.tar.gz(r-4.5-noble)SCOPRO_0.1.0.tar.gz(r-4.4-noble)
SCOPRO_0.1.0.tgz(r-4.4-emscripten)SCOPRO_0.1.0.tgz(r-4.3-emscripten)
SCOPRO.pdf |SCOPRO.html✨
SCOPRO/json (API)

# Install 'SCOPRO' in R:

install.packages('SCOPRO', repos = c('https://gabrielelubatti.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/scialdonelab/scopro/issues

On CRAN:

software

2.70 score 3 scripts 175 downloads 7 exports 28 dependencies

Last updated 2 years agofrom:d1962de08f. Checks:OK: 7. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 08 2024
R-4.5-win	OK	Nov 08 2024
R-4.5-linux	OK	Nov 08 2024
R-4.4-win	OK	Nov 08 2024
R-4.4-mac	OK	Nov 08 2024
R-4.3-win	OK	Nov 08 2024
R-4.3-mac	OK	Nov 08 2024

Exports:filter_in_vitro plot_score plot_score_genes SCOPRO select_common_genes select_no_common_genes select_top_markers

Dependencies:cli colorspace fansi farver ggplot2 glue gtable isoband labeling lattice lifecycle magrittr MASS Matrix mgcv munsell nlme pillar pkgconfig R6 RColorBrewer rlang scales tibble utf8 vctrs viridisLite withr

SCOPRO

Rendered fromSCOPRO_vignette.Rmdusingknitr::rmarkdownon Nov 08 2024.

Last update: 2022-08-23
Started: 2022-08-23

Citation

Readme and manuals

Help Manual

Help page	Topics
filter_in_vitro	filter_in_vitro
plot_score	plot_score
plot_score_genes	plot_score_genes
SCOPRO	SCOPRO
select_common_genes	select_common_genes
select_no_common_genes	select_no_common_genes
select_top_markers	select_top_markers